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1

Natural Images from the Birthplace of the Human Eye

Tkačik, Gašper, Garrigan, Patrick, Ratliff, Charles, Milčinski, Grega, Klein, Jennifer M., Seyfarth, Lucia H., Sterling, Peter, Brainard, David H., Balasubramanian, Vijay, Burr, David C.

Journal:

Année:

2011

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2011

2

Learning Quadratic Receptive Fields from Neural Responses to Natural Stimuli

Rajan, Kanaka, Marre, Olivier, Tkačik, Gašper

Journal:

Neural Computation

Année:

2013

Langue:

english

Fichier:

PDF, 732 KB

english, 2013

3

The simplest maximum entropy model for collective behavior in a neural network

Tkačik, Gašper, Marre, Olivier, Mora, Thierry, Amodei, Dario, Berry II, Michael J, Bialek, William

Journal:

Journal of Statistical Mechanics Theory and Experiment

Année:

2013

Langue:

english

Fichier:

PDF, 479 KB

english, 2013

4

Biased partitioning of the multidrug efflux pump AcrAB-TolC underlies long-lived phenotypic heterogeneity

Bergmiller, Tobias, Andersson, Anna M. C., Tomasek, Kathrin, Balleza, Enrique, Kiviet, Daniel J., Hauschild, Robert, Tkačik, Gašper, Guet, Călin C.

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 582 KB

english, 2017

5

Shaping bacterial population behavior through computer-interfaced control of individual cells

Chait, Remy, Ruess, Jakob, Bergmiller, Tobias, Tkačik, Gašper, Guet, Călin C.

Journal:

Nature Communications

Année:

2017

Langue:

english

Fichier:

PDF, 1.86 MB

english, 2017

6

Optimal Decoding of Cellular Identities in a Genetic Network

Petkova, Mariela D., Tkačik, Gašper, Bialek, William, Wieschaus, Eric F., Gregor, Thomas

Journal:

Année:

2019

Fichier:

PDF, 11.12 MB

2019

7

[IEEE 2019 IEEE Information Theory Workshop (ITW) - Visby, Sweden (2019.8.25-2019.8.28)] 2019 IEEE Information Theory Workshop (ITW) - A Tight Upper Bound on Mutual Information

Hledik, Michal, Sokolowski, Thomas R., Tkacik, Gasper

Année:

2019

Fichier:

PDF, 5.73 MB

2019

8

Decoding spike timing: The differential reverse-correlation method

Gašper Tkačik, Marcelo O. Magnasco

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2008

9

Optimal correlation codes in populations of noisy spiking neurons

Gasper Tkacik, Jason Prentice, Elad Schneidman, Vijay Balasubramanian

Journal:

BMC Neuroscience

Année:

2009

Langue:

english

Fichier:

PDF, 135 KB

english, 2009

10

Scalable, Bayesian, multi-electrode spike sorting

Jason Prentice, Jan Homann, Kristina Simmons, Gasper Tkacik, Philip Nelson, Vijay Balasubramanian

Journal:

BMC Neuroscience

Année:

2010

Langue:

english

Fichier:

PDF, 127 KB

english, 2010

11

Fast, Scalable, Bayesian Spike Identification for Multi-Electrode Arrays

Prentice, Jason S., Homann, Jan, Simmons, Kristina D., Tkacik, Gasper, Balasubramanian, Vijay, Nelson, Philip

Journal:

Biophysical Journal

Année:

2011

Langue:

english

Fichier:

PDF, 57 KB

english, 2011

12

A simple method for estimating the entropy of neural activity

Berry II, Michael J, Tkačik, Gašper, Dubuis, Julien, Marre, Olivier, da Silveira, Rava Azeredo

Journal:

Journal of Statistical Mechanics Theory and Experiment

Année:

2013

Langue:

english

Fichier:

PDF, 770 KB

english, 2013

13

Retinal Metric: A Stimulus Distance Measure Derived from Population Neural Responses

Tkačik, Gašper, Granot-Atedgi, Einat, Segev, Ronen, Schneidman, Elad

Journal:

Physical Review Letters

Année:

2013

Langue:

english

Fichier:

PDF, 516 KB

english, 2013

14

Noise and Information Transmission in Promoters with Multiple Internal States

Rieckh, Georg, Tkačik, Gašper

Journal:

Biophysical Journal

Année:

2014

Langue:

english

Fichier:

PDF, 1010 KB

english, 2014

15

Optimizing information flow in small genetic networks. II. Feed-forward interactions

Walczak, Aleksandra M., Tkačik, Gašper, Bialek, William

Journal:

Physical Review E

Année:

2010

Langue:

english

Fichier:

PDF, 440 KB

english, 2010

16

Optimizing information flow in small genetic networks. III. A self-interacting gene

Tkačik, Gašper, Walczak, Aleksandra M., Bialek, William

Journal:

Physical Review E

Année:

2012

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2012

17

Statistical Thermodynamics of Natural Images

Stephens, Greg J., Mora, Thierry, Tkačik, Gašper, Bialek, William

Journal:

Physical Review Letters

Année:

2013

Langue:

english

Fichier:

PDF, 678 KB

english, 2013

18

Diffusion, dimensionality, and noise in transcriptional regulation

Tkačik, Gašper, Bialek, William

Journal:

Physical Review E

Année:

2009

Langue:

english

Fichier:

PDF, 227 KB

english, 2009

19

Optimizing information flow in small genetic networks

Tkačik, Gašper, Walczak, Aleksandra M., Bialek, William

Journal:

Physical Review E

Année:

2009

Langue:

english

Fichier:

PDF, 671 KB

english, 2009

20

Information capacity of genetic regulatory elements

Tkačik, Gašper, Callan, Curtis G., Bialek, William

Journal:

Physical Review E

Année:

2008

Langue:

english

Fichier:

PDF, 450 KB

english, 2008

21

Information transmission in genetic regulatory networks: a review

Tkačik, Gašper, Walczak, Aleksandra M

Journal:

Journal of Physics Condensed Matter

Année:

2011

Langue:

english

Fichier:

PDF, 1.51 MB

english, 2011

22

Searching for Collective Behavior in a Large Network of Sensory Neurons

Tkačik, Gašper, Marre, Olivier, Amodei, Dario, Schneidman, Elad, Bialek, William, Berry, Michael J., Sporns, Olaf

Journal:

PLoS Computational Biology

Année:

2014

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2014

23

Transformation of Stimulus Correlations by the Retina

Simmons, Kristina D., Prentice, Jason S., Tkačik, Gašper, Homann, Jan, Yee, Heather K., Palmer, Stephanie E., Nelson, Philip C., Balasubramanian, Vijay, Bethge, Matthias

Journal:

PLoS Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 2.97 MB

english, 2013

24

Stimulus-dependent Maximum Entropy Models of Neural Population Codes

Granot-Atedgi, Einat, Tkačik, Gašper, Segev, Ronen, Schneidman, Elad, Sporns, Olaf

Journal:

PLoS Computational Biology

Année:

2013

Langue:

english

Fichier:

PDF, 1.48 MB

english, 2013

25

SPIE Proceedings [SPIE Astronomical Telescopes and Instrumentation - Waikoloa, HI (Thursday 22 August 2002)] Advanced Telescope and Instrumentation Control Software II - CORBA-based Common Software for the ALMA project

Chiozzi, Gianluca, Gustafsson, Birger, Jeram, Bogdan, Plesko, Mark, Sekoranja, Matej, Tkacik, Gasper, Zagar, K., Lewis, Hilton

Année:

2002

Langue:

english

Fichier:

PDF, 216 KB

english, 2002

26

Thermodynamics and signatures of criticality in a network of neurons

Tkačik, Gašper, Mora, Thierry, Marre, Olivier, Amodei, Dario, Palmer, Stephanie E., Berry, Michael J., Bialek, William

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 1.93 MB

english, 2015

27

Local statistics in natural scenes predict the saliency of synthetic textures

Gašper Tkačik, Jason S. Prentice, Jonathan D. Victor, Vijay Balasubramanian and Wilson S. Geisler

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.54 MB

english, 2010

28

Optimal population coding by noisy spiking neurons

Gašper Tkačik, Jason S. Prentice, Vijay Balasubramanian, Elad Schneidman and Curtis G. Callan

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.46 MB

english, 2010

29

Information Processing in Living Systems

Tkačik, Gašper, Bialek, William

Journal:

Annual Review of Condensed Matter Physics

Année:

2016

Langue:

english

Fichier:

PDF, 866 KB

english, 2016

30

Optimizing information flow in small genetic networks. IV. Spatial coupling

Sokolowski, Thomas R., Tkačik, Gašper

Journal:

Physical Review E

Année:

2015

Langue:

english

Fichier:

PDF, 1.32 MB

english, 2015

31

Extending the dynamic range of transcription factor action by translational regulation

Sokolowski, Thomas R., Walczak, Aleksandra M., Bialek, William, Tkačik, Gašper

Journal:

Physical Review E

Année:

2016

Langue:

english

Fichier:

PDF, 572 KB

english, 2016

32

Stochastic Proofreading Mechanism Alleviates Crosstalk in Transcriptional Regulation

Cepeda-Humerez, Sarah A., Rieckh, Georg, Tkačik, Gašper

Journal:

Physical Review Letters

Année:

2015

Langue:

english

Fichier:

PDF, 399 KB

english, 2015

33

Understanding regulatory networks requires more than computing a multitude of graph statistics

Tkačik, Gašper

Journal:

Physics of Life Reviews

Année:

2016

Langue:

english

Fichier:

PDF, 134 KB

english, 2016

34

Intrinsic limits to gene regulation by global crosstalk

Friedlander, Tamar, Prizak, Roshan, Guet, Călin C., Barton, Nicholas H., Tkačik, Gašper

Journal:

Nature Communications

Année:

2016

Langue:

english

Fichier:

PDF, 842 KB

english, 2016

35

Discrete modes of social information processing predict individual behavior of fish in a group

Harpaz, Roy, Tkačik, Gašper, Schneidman, Elad

Journal:

Proceedings of the National Academy of Sciences

Année:

2017

Langue:

english

Fichier:

PDF, 2.81 MB

english, 2017

36

Multiplexed computations in retinal ganglion cells of a single type

Deny, Stéphane, Ferrari, Ulisse, Macé, Emilie, Yger, Pierre, Caplette, Romain, Picaud, Serge, Tkačik, Gašper, Marre, Olivier

Journal:

Nature Communications

Année:

2017

Langue:

english

Fichier:

PDF, 2.74 MB

english, 2017

37

Toward a unified theory of efficient, predictive, and sparse coding

Chalk, Matthew, Marre, Olivier, Tkačik, Gašper

Journal:

Proceedings of the National Academy of Sciences

Année:

2017

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2017

38

Distributed and dynamic intracellular organization of extracellular information

Granados, Alejandro A., Pietsch, Julian M. J., Cepeda-Humerez, Sarah A., Farquhar, Iseabail L., Tkačik, Gašper, Swain, Peter S.

Journal:

Proceedings of the National Academy of Sciences

Année:

2018

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2018

39

Error-Robust Modes of the Retinal Population Code

Prentice, Jason S., Marre, Olivier, Ioffe, Mark L., Loback, Adrianna R., Tkačik, Gašper, Berry, Michael J., Stevenson, Ian H.

Journal:

PLoS Computational Biology

Année:

2016

Langue:

english

Fichier:

PDF, 4.28 MB

english, 2016

40

High Accuracy Decoding of Dynamical Motion from a Large Retinal Population

Marre, Olivier, Botella-Soler, Vicente, Simmons, Kristina D., Mora, Thierry, Tkačik, Gašper, Berry, Michael J., Bethge, Matthias

Journal:

PLoS Computational Biology

Année:

2015

Langue:

english

Fichier:

PDF, 4.46 MB

english, 2015

41

The Role of Input Noise in Transcriptional Regulation

Tkačik, Gašper, Gregor, Thomas, Bialek, William, Morty, Rory Edward

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 405 KB

english, 2008

42

Probabilistic models of individual and collective animal behavior

Bod’ová, Katarína, Mitchell, Gabriel J., Harpaz, Roy, Schneidman, Elad, Tkačik, Gašper, MacArthur, Ben D.

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 6.57 MB

english, 2018

43

Statistical mechanics for metabolic networks during steady state growth

De Martino, Daniele, MC Andersson, Anna, Bergmiller, Tobias, Guet, Călin C., Tkačik, Gašper

Journal:

Nature Communications

Année:

2018

Langue:

english

Fichier:

PDF, 1019 KB

english, 2018

44

Evolutionary potential of transcription factors for gene regulatory rewiring

Igler, Claudia, Lagator, Mato, Tkačik, Gašper, Bollback, Jonathan P., Guet, Călin C.

Journal:

Nature Ecology & Evolution

Année:

2018

Langue:

english

Fichier:

PDF, 2.94 MB

english, 2018

45

Nonlinear decoding of a complex movie from the mammalian retina

Botella-Soler, Vicente, Deny, Stéphane, Martius, Georg, Marre, Olivier, Tkačik, Gašper, Faisal, Aldo A

Journal:

PLoS Computational Biology

Année:

2018

Langue:

english

Fichier:

PDF, 3.30 MB

english, 2018

46

Molecular noise of innate immunity shapes bacteria-phage ecologies

Ruess, Jakob, Pleška, Maroš, Guet, Cǎlin C., Tkačik, Gašper, Igoshin, Oleg A

Journal:

PLoS Computational Biology

Année:

2019

Langue:

english

Fichier:

PDF, 4.45 MB

english, 2019

47

Retinal adaptation to spatial correlations

Simmons, Kristina, Prentice, Jason, Homann, Jan, Tkacik, Gasper, Nelson, Philip, Balasubramanian, Vijay

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2011

48

Local statistics in natural scenes predict the saliency of synthetic textures

Tkacik, Gasper, Prentice, Jason, Victor, Jonathan, Balasubramanian, Vijay

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 1.84 MB

2011

49

The statistics of contour fragments in natural scenes

Merel, Josh, Tkacik, Gasper, Gifford, Adam, Prentice, Jason, Balasubramanian, Vijay

Journal:

Bioentrepreneur

Année:

2011

Langue:

english

Fichier:

PDF, 3.38 MB

english, 2011

50

Retinal adaptation to spatial correlations

Simmons, Kristina, Prentice, Jason, Homann, Jan, Tkacik, Gasper, Nelson, Philip, Balasubramanian, Vijay

Journal:

Bioentrepreneur

Année:

2011

Fichier:

PDF, 1.78 MB

2011